taxon	lfc: Smoker 12 Weeks P1 vs. Baseline B P1	se: Smoker 12 Weeks P1 vs. Baseline B P1	W: Smoker 12 Weeks P1 vs. Baseline B P1	p: Smoker 12 Weeks P1 vs. Baseline B P1	q: Smoker 12 Weeks P1 vs. Baseline B P1	diff: Smoker 12 Weeks P1 vs. Baseline B P1
Streptococcus mitis (SP1) 	-0.664814179765788	0.667314640900676	-0.996252950285171	0.319127257884871	1	FALSE
Corynebacterium durum (SP10) 	-0.0122273338714992	0.475662547273274	-0.0257058999948432	0.979491917897965	1	FALSE
Actinomyces sp._HMT_175 (SP100) 	0.0678106283967659	0.647924019590769	0.104658303051638	0.916646949534749	1	FALSE
Lachnoanaerobaculum saburreum (SP101) 	0.483956031163479	0.531578076092427	0.910413828051351	0.362604307860762	1	FALSE
Prevotella intermedia (SP104) 	-0.0432494193105607	0.537270183063522	-0.0804984543604335	0.935840825488962	1	FALSE
Neisseria elongata (SP105) 	0.364096171264934	0.442354489070945	0.823086868700319	0.410458595611027	1	FALSE
Solobacterium moorei (SP106) 	-0.604505921830958	0.43891206210294	-1.37728254478725	0.168424909749307	1	FALSE
Prevotella maculosa (SP107) 	0.0771890075716104	0.439467365387921	0.175642183358655	0.860575059964353	1	FALSE
Fusobacterium nucleatum_subsp._vincentii (SP109) 	0.107091374650407	0.521562454110619	0.20532799822223	0.837315870625848	1	FALSE
Saccharibacteria_(TM7)_[G-5] bacterium_HMT_356 (SP111) 	-0.477079762067448	0.582623483541557	-0.818847464176097	0.412873446824827	1	FALSE
Streptococcus salivarius (SP115) 	-0.863694604846993	0.603654955915797	-1.43077530695775	0.15249462224999	1	FALSE
Peptostreptococcaceae_[XI][G-5] [Eubacterium]_saphenum (SP117) 	-0.071610259495129	0.422901668640868	-0.169330756545066	0.865536485055554	1	FALSE
Leptotrichia hongkongensis (SP119) 	0.103244732834009	0.564748448545259	0.182815434198993	0.854942837963151	1	FALSE
Selenomonas sputigena (SP12) 	0.163727525562083	0.575099257570172	0.284694378243229	0.775878298012034	1	FALSE
Peptidiphaga gingivicola (SP121) 	-0.292104383380393	0.544795639609615	-0.536172395927593	0.591839409387726	1	FALSE
Olsenella sp._HMT_807 (SP124) 	-0.97529986028364	0.635869352529377	-1.53380542151319	0.12507752883762	1	FALSE
Selenomonas noxia (SP128) 	-0.139142313735331	0.495594746226089	-0.280758250152747	0.778895827635053	1	FALSE
Capnocytophaga leadbetteri (SP129) 	0.651925919773147	0.530218382423698	1.22954228179172	0.218868555223848	1	FALSE
Parvimonas micra (SP13) 	0.0400321663881229	0.620492561725443	0.0645167546840576	0.948558766595564	1	FALSE
Capnocytophaga sp._HMT_864 (SP130) 	0.0866683040962944	0.408583694120235	0.212118851886415	0.832014312661476	1	FALSE
Gemella haemolysans (SP131) 	-0.543581503115171	0.456921624968761	-1.18966026865621	0.234179947385045	1	FALSE
Dialister invisus (SP134) 	0.37495577864038	0.576382612542702	0.6505327719486	0.515348139982676	1	FALSE
Actinomyces sp._HMT_170 (SP136) 	-0.254185247009997	0.518028103946682	-0.490678488432279	0.623653863470995	1	FALSE
Leptotrichia wadei (SP137) 	-0.343013687990665	0.632437685794963	-0.542367565524662	0.587565318814555	1	FALSE
Treponema sp._HMT_237 (SP140) 	0.334075540238716	0.467904185453621	0.713982799523023	0.475237815554898	1	FALSE
Bergeyella sp._HMT_322 (SP141) 	-0.00637015901359102	0.510866942417197	-0.0124693114482026	0.990051186725401	1	FALSE
Gemella morbillorum (SP142) 	0.00631065786982263	0.534284620218229	0.0118114159214335	0.990576072716879	1	FALSE
Leptotrichia sp._HMT_417 (SP143) 	-0.0294286422212355	0.442212139493729	-0.0665486982219149	0.946940988034211	1	FALSE
Streptococcus oralis_subsp._dentisani_clade_058 (SP144) 	-0.128965423927413	0.432284960503736	-0.298334283425293	0.765448040559343	1	FALSE
Stomatobaculum longum (SP145) 	0.388221067009124	0.534350063039218	0.726529467969073	0.467514249283135	1	FALSE
Veillonellaceae_[G-1] bacterium_HMT_150 (SP146) 	-0.409954853147931	0.429788933239498	-0.953851580258083	0.340158775825159	1	FALSE
Prevotella salivae (SP147) 	0.38833804710356	0.467506166487752	0.830658662795914	0.406166484782511	1	FALSE
Alloprevotella sp._HMT_473 (SP15) 	0.254602190961299	0.435563830499142	0.584534741256025	0.558860598691809	1	FALSE
Campylobacter showae (SP151) 	0.572584369723098	0.459416536186704	1.24632947363132	0.212643461575571	1	FALSE
Porphyromonas endodontalis (SP156) 	0.328666332306022	0.567120040485519	0.579535739954889	0.562227738292955	1	FALSE
Scardovia wiggsiae (SP158) 	-0.153655682642279	0.628528623927983	-0.244468870299031	0.806867708548292	1	FALSE
Capnocytophaga endodontalis (SP159) 	-0.10135540152293	0.462651436942766	-0.219075082080569	0.826591560922082	1	FALSE
Streptococcus intermedius (SP167) 	0.571661376433098	0.591844182949612	0.965898445743054	0.334095000167529	1	FALSE
Mycoplasma faucium (SP169) 	0.149381316773211	0.435249988625305	0.343208088861799	0.731441919827549	1	FALSE
Fusobacterium nucleatum (SP17) 	1.19452789927626	0.494515987609577	2.41554960649594	0.0157114821806103	1	FALSE
Treponema sp._HMT_257 (SP170) 	-0.21818017804048	0.428551577346169	-0.509110663858883	0.610674657486119	1	FALSE
Lachnoanaerobaculum orale (SP174) 	-0.370288898841656	0.438152270524047	-0.845114641078492	0.398046834510807	1	FALSE
Actinomyces sp._HMT_897 (SP175) 	0.057513838353356	0.532166468992719	0.10807490081481	0.913936277766026	1	FALSE
Saccharibacteria_(TM7)_[G-1] bacterium_HMT_347 (SP176) 	-0.299634141715873	0.53216528473925	-0.563047140255846	0.573402784512708	1	FALSE
Capnocytophaga sp._HMT_336 (SP179) 	-0.186915355349363	0.404747312612401	-0.461807526634177	0.644219352910375	1	FALSE
Catonella morbi (SP18) 	0.57245358265689	0.504432455766583	1.13484684839903	0.25643949322455	1	FALSE
Leptotrichia sp._HMT_215 (SP184) 	0.230030823634873	0.452487200483084	0.508369791210199	0.611194033993161	1	FALSE
Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351 (SP185) 	-0.106438934282798	0.414873394374622	-0.256557628727297	0.797520287686681	1	FALSE
Prevotella veroralis (SP19) 	0.540265524897584	0.467229987822729	1.1563160306024	0.24755191364155	1	FALSE
Prevotella pleuritidis (SP193) 	0.123689079866812	0.52816779541559	0.234185198227558	0.814841205654767	1	FALSE
Lautropia mirabilis (SP194) 	1.05032684079018	0.567660303974854	1.85027354112242	0.0642741341524465	1	FALSE
Granulicatella adiacens (SP20) 	-0.296747766638362	0.637203080096043	-0.465703597342364	0.641427677070944	1	FALSE
Veillonellaceae_[G-1] bacterium_HMT_132 (SP200) 	-0.245838575451632	0.424199948630533	-0.57953466577562	0.562228462871596	1	FALSE
Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP207) 	-0.595952946687328	0.550479649304796	-1.08260668208164	0.278983040100707	1	FALSE
Bulleidia extructa (SP212) 	-0.14911263765997	0.397727711658714	-0.374911360936103	0.707726389524939	1	FALSE
Streptococcus cristatus (SP214) 	-0.268346858013713	0.639803448458223	-0.419420774708805	0.674908643902293	1	FALSE
Neisseria sicca (SP215) 	0.103977051788401	0.491846120014434	0.211401589963442	0.832573916168168	1	FALSE
Peptococcus sp._HMT_167 (SP218) 	0.351245533566748	0.504628455191061	0.696047814889392	0.486398885984025	1	FALSE
Tannerella sp._HMT_808 (SP22) 	-0.383634346284049	0.449273645817767	-0.85389906542539	0.393160917447992	1	FALSE
Oribacterium sp._HMT_078 (SP220) 	0.628019730863784	0.553246842784876	1.13515285094538	0.256311280634956	1	FALSE
Fretibacterium sp._HMT_360 (SP223) 	-0.368612590269416	0.47437385728507	-0.777050810470575	0.437128793437472	1	FALSE
Peptostreptococcus stomatis (SP226) 	0.159629986951118	0.475279010642986	0.335865845906306	0.736972033438088	1	FALSE
Streptococcus oralis_subsp._tigurinus_clade_070 (SP230) 	-0.488536553810539	0.638791325345818	-0.764782698866587	0.444400951739176	1	FALSE
Treponema sp._HMT_231 (SP231) 	-0.131668343811425	0.407379886927351	-0.323207767581579	0.74653789866919	1	FALSE
Bacteroidales_[G-2] bacterium_HMT_274 (SP232) 	-0.0276997613000936	0.524455319064798	-0.0528162462905085	0.957878316899803	1	FALSE
Capnocytophaga sputigena (SP24) 	0.213690420997075	0.461842528206398	0.462691086130501	0.643585808536893	1	FALSE
Lachnospiraceae_[G-3] bacterium_HMT_100 (SP244) 	0.628824308533169	0.416209412407464	1.5108363477315	0.130830151477925	1	FALSE
Filifactor alocis (SP245) 	0.12625291935876	0.487190461346794	0.259144891732374	0.795523448920934	1	FALSE
Kingella oralis (SP253) 	0.166553262556055	0.590230885792103	0.282183238060368	0.77780301037138	1	FALSE
Actinomyces israelii (SP256) 	-0.275478126187207	0.625441332009604	-0.440453983592783	0.659608333580329	1	FALSE
Arachnia propionica (SP258) 	-0.318342175347195	0.469524953659969	-0.678009066111828	0.497765944899414	1	FALSE
Shuttleworthia satelles (SP260) 	-0.144435277243871	0.465127114551636	-0.310528611910963	0.756159004949441	1	FALSE
Actinomyces sp._HMT_448 (SP264) 	-1.22591503103865	0.741841380560981	-1.65252985767876	0.0984265836550199	1	FALSE
Rothia aeria (SP269) 	0.0153217268586082	0.536841906432469	0.028540482169932	0.977231081065802	1	FALSE
Aggregatibacter sp._HMT_458 (SP27) 	-0.245883141378715	0.47069519490653	-0.522382943440803	0.601403729365598	1	FALSE
Schaalia sp._HMT_180 (SP275) 	-0.334877289941693	0.563117680752498	-0.594684381946939	0.55205446353327	1	FALSE
Saccharibacteria_(TM7)_[G-1] bacterium_HMT_349 (SP276) 	-0.473888289685564	0.540375175615244	-0.876961620500088	0.38050748453932	1	FALSE
Tannerella sp._HMT_286 (SP28) 	0.309160675625858	0.40808552014573	0.757587957336626	0.448697691777127	1	FALSE
Alloprevotella sp._HMT_912 (SP299) 	0.214631933253078	0.403454058174406	0.531986056167755	0.594735653031301	1	FALSE
Actinomyces naeslundii (SP3) 	0.162016246144951	0.525353912514739	0.308394479008293	0.757782182503619	1	FALSE
Prevotella melaninogenica (SP30) 	0.357457650282527	0.495426753413004	0.72151462919593	0.47059294321005	1	FALSE
Fusobacterium canifelinum (SP301) 	0.21668912366249	0.392381941885582	0.552240306017131	0.580783722782189	1	FALSE
Actinomyces oris (SP31) 	-0.293958683991188	0.650954484144355	-0.451581010886776	0.651570852376292	1	FALSE
Mogibacterium timidum (SP319) 	0.263539385883051	0.505114824276714	0.521741539184519	0.601850298429232	1	FALSE
Veillonellaceae_[G-1] bacterium_HMT_155 (SP335) 	0.337359196095798	0.447409128849486	0.75402841458179	0.450832159938666	1	FALSE
Lancefieldella parvula (SP338) 	-0.330653641232793	0.544812191429958	-0.606913072860819	0.543908601965494	1	FALSE
Streptococcus gordonii (SP34) 	-0.373652383535429	0.644111015356227	-0.580105563524293	0.561843432170137	1	FALSE
Lancefieldella rimae (SP341) 	0.15573230387192	0.610028450802769	0.255286952054421	0.798501476906872	1	FALSE
Fretibacterium fastidiosum (SP345) 	0.105660159706331	0.509597732824406	0.207340325320362	0.835744083285305	1	FALSE
Corynebacterium matruchotii (SP35) 	-1.16913308154054	0.641674852624841	-1.82200233772302	0.0684546309417509	1	FALSE
Saccharibacteria_(TM7)_[G-1] bacterium_HMT_957 (SP358) 	0.209691817319543	0.44148276227257	0.47497169819301	0.63480714594858	1	FALSE
Prevotella sp._HMT_300 (SP36) 	0.139384284548728	0.514262493348544	0.271037235558728	0.786362393893124	1	FALSE
Actinomyces massiliensis (SP360) 	-0.120752181526695	0.495898925707303	-0.243501599352058	0.807616846286572	1	FALSE
Cryptobacterium curtum (SP364) 	-0.159053964912652	0.441152291859482	-0.3605420800201	0.718441794198951	1	FALSE
Actinomyces viscosus (SP366) 	-0.0966891827263836	0.461257450307606	-0.209620858507332	0.83396359858455	1	FALSE
Aggregatibacter aphrophilus (SP37) 	0.489380485578572	0.46294720110621	1.05709783839108	0.290466937648136	1	FALSE
Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infirmum (SP379) 	-0.389340775161035	0.426129593426561	-0.91366753486961	0.360891567947441	1	FALSE
Peptostreptococcaceae_[XI][G-6] [Eubacterium]_nodatum (SP391) 	0.0987401471954821	0.423185735346895	0.233325792785861	0.815508431512384	1	FALSE
Streptococcus parasanguinis_clade_411 (SP4) 	-0.551176728053686	0.658128198862268	-0.837491432530207	0.402316390723289	1	FALSE
Streptococcus sanguinis (SP40) 	0.665453715100048	0.686180492957916	0.969793985590407	0.332149191362751	1	FALSE
Actinomyces sp._HMT_414 (SP407) 	-0.463679723770028	0.428812650724985	-1.0813107378854	0.279558912525694	1	FALSE
Streptococcus mutans (SP41) 	-0.784061559896971	0.701899186737711	-1.1170572280346	0.263969856944991	1	FALSE
Prevotella oralis (SP417) 	-0.13206275874361	0.435939887644709	-0.30293800243221	0.761937109520708	1	FALSE
Prevotella oris (SP42) 	-0.145152503445554	0.616729777626002	-0.235358350952818	0.813930609280825	1	FALSE
Peptidiphaga sp._HMT_183 (SP428) 	-0.647735701803439	0.542302831745503	-1.19441696389189	0.232314904286869	1	FALSE
Schaalia meyeri (SP43) 	-0.769124401137119	0.523973953927586	-1.46786762084631	0.142140184948888	1	FALSE
Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP44) 	0.488099923324708	0.588188726350666	0.829835563753585	0.406631760439429	1	FALSE
Bifidobacterium dentium (SP46) 	-0.512048839605107	0.514864488043218	-0.994531282495687	0.319964283487501	1	FALSE
Actinomyces dentalis (SP47) 	-0.313592450460243	0.621549073178433	-0.504533694912642	0.613886390319121	1	FALSE
Eikenella corrodens (SP48) 	0.205662023869688	0.453523072021411	0.453476430544153	0.650205711436532	1	FALSE
Prevotella denticola (SP49) 	0.78734085941169	0.631055339581901	1.24765739235062	0.212156550991806	1	FALSE
Streptococcus sp._HMT_064 (SP5) 	-0.0876484979327244	0.488002430797763	-0.179606683084428	0.857461357665211	1	FALSE
Treponema socranskii (SP51) 	-0.310310486917773	0.588947878971021	-0.526889556780359	0.598270286410968	1	FALSE
Schaalia odontolytica (SP52) 	-0.23705966646857	0.469002596432344	-0.505454912769907	0.613239358449963	1	FALSE
Actinomyces sp._HMT_169 (SP53) 	-0.33475963737706	0.704441721064619	-0.475212678873051	0.634635390935974	1	FALSE
Treponema denticola (SP54) 	0.208551253816317	0.471341439474334	0.442463225913056	0.658154035510494	1	FALSE
Prevotella oulorum (SP57) 	0.434273623374587	0.51837625634848	0.837757551693582	0.40216688339016	1	FALSE
Rothia mucilaginosa (SP59) 	-0.202052456517268	0.528752715292934	-0.382130343113849	0.702364686035876	1	FALSE
Capnocytophaga gingivalis (SP6) 	0.418039130018524	0.542074487349348	0.771183923564942	0.44059792182433	1	FALSE
Selenomonas flueggei (SP60) 	-0.408099905173442	0.408873677897004	-0.998107550655884	0.318227209125587	1	FALSE
Alloprevotella tannerae (SP63) 	-0.207078174471236	0.575263886600383	-0.359970753066038	0.718869005156722	1	FALSE
Tannerella forsythia (SP64) 	-0.407855892402571	0.50857787665191	-0.801953665557739	0.42257976116524	1	FALSE
Veillonella atypica (SP65) 	0.149519683658918	0.447034405168333	0.334470192741912	0.738024779764586	1	FALSE
Porphyromonas gingivalis (SP67) 	-0.283471356212489	0.497782042572501	-0.569468827657041	0.569038019531895	1	FALSE
Streptococcus constellatus (SP68) 	0.248262907330743	0.445666408295844	0.557059950468467	0.577486469593119	1	FALSE
Streptococcus anginosus (SP69) 	-0.575443157258391	0.612643662271641	-0.939278723825668	0.347587659362507	1	FALSE
Actinomyces sp._HMT_171 (SP74) 	-0.0536680449294547	0.593483959895685	-0.0904288044092849	0.927946467847819	1	FALSE
Campylobacter gracilis (SP78) 	0.271384927931697	0.587324481864345	0.462069837562772	0.644031239406892	1	FALSE
Veillonella parvula (SP8) 	-0.827423438590795	0.612088920882878	-1.35180267173815	0.176438449234794	1	FALSE
Parvimonas sp._HMT_110 (SP80) 	0.633180982994939	0.483517547425471	1.30953051521369	0.190354708096714	1	FALSE
Selenomonas artemidis (SP81) 	0.0378351993612567	0.449077440853994	0.0842509463163121	0.932856912836812	1	FALSE
Haemophilus parainfluenzae (SP83) 	1.03148245403965	0.658430566075103	1.56657741481885	0.117213500375243	1	FALSE
Anaeroglobus geminatus (SP84) 	0.470389174435737	0.489562674339475	0.960835453949575	0.336634909037979	1	FALSE
Cardiobacterium hominis (SP86) 	0.0139235954382655	0.454127656621412	0.0306600913537249	0.975540618673785	1	FALSE
Campylobacter concisus (SP88) 	-0.572990696219603	0.509977748074574	-1.12356019136704	0.261199652111361	1	FALSE
Streptococcus oralis (SP89) 	0.206273399052486	0.648415338987323	0.318119246491976	0.750394484812225	1	FALSE
Porphyromonas pasteri (SP9) 	0.41792680710855	0.46113101388304	0.906308173873015	0.364772760322897	1	FALSE
Prevotella loescheii (SP91) 	0.441221128201799	0.479069795110079	0.920995505676614	0.357052773477199	1	FALSE
Mogibacterium neglectum (SP92) 	-0.0669726147709083	0.436377338141023	-0.153474089777927	0.878024421587972	1	FALSE
Rothia dentocariosa (SP93) 	-0.562213024404264	0.654846557773668	-0.858541619758471	0.390593458977206	1	FALSE
Megasphaera micronuciformis (SP95) 	0.315371417927052	0.470648363741864	0.67007864516878	0.502807657239389	1	FALSE
Alloprevotella rava (SP96) 	0.107288610946764	0.467102701612161	0.2296895534461	0.81833301304553	1	FALSE
Prevotella sp._HMT_317 (SP97) 	0.183698814560441	0.532604114857103	0.344906863158066	0.730164390810506	1	FALSE
Actinomyces sp._HMT_525 (SP98) 	-0.894565818632379	0.583911356848547	-1.53202332535623	0.125516678887762	1	FALSE
Schaalia sp._HMT_178 (SP99) 	0.0451040946138579	0.509374291981036	0.0885480388859852	0.929441104745519	1	FALSE
Actinomyces naeslundii_nov_97.422% (SPN109) 	0.0172089007829028	0.546619500993345	0.031482412814819	0.974884817733406	1	FALSE
Actinomyces sp._HMT_175_nov_97.633% (SPN133) 	-0.254416746746482	0.51148688160268	-0.4974062012095	0.618902633462867	1	FALSE
Streptococcus sanguinis_nov_97.727% (SPN14) 	-0.0808462204543281	0.489874882182569	-0.165034426942098	0.868916884792078	1	FALSE
Actinomyces viscosus_nov_95.849% (SPN249) 	0.181535845174358	0.557823991739194	0.325435707073771	0.744851334655332	1	FALSE
Actinomyces viscosus_nov_95.841% (SPN469) 	-0.0101882628720623	0.476345965049165	-0.0213883681601264	0.982935852308207	1	FALSE
Actinomyces israelii_nov_97.037% (SPN579) 	-0.921501117600237	0.429696329235817	-2.14454035304201	0.0319896157225327	1	FALSE
Prevotella veroralis_nov_96.402% (SPN611) 	0.186504644704831	0.41663610377524	0.447643982398229	0.654410155609192	1	FALSE
Veillonella dispar_parvula (SPP45) 	-0.10240677521409	0.60913620901818	-0.168118023026659	0.86649043082533	1	FALSE
